The BioSAFE project

2022
Year
2022
Title
Genomic biosurveillance detects a sexual hybrid in the sudden oak death pathogen
Author
Richard C. Hamelin, Guillaume J. Bilodeau, Renate Heinzelmann, Kelly Hrywkiw, Arnaud Capron, Erika Dort, Angela L. Dale, Emilie Giroux, Stacey Kus, Nick C. Carleson, Niklaus J. Grünwald & Nicolas Feau
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Year
2022
Title
Urban environments harbor greater oomycete and Phytophthora diversity, creating a bridgehead for potential new pathogens to natural ecosystems
Author
Angela L. Dale,Nicolas Feau,Jean A. Berube,Julien Ponchart,Guillaume J. Bilodeau,Richard C. Hamelin
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2021
Year
2021
Title
Potential Differences and Methods of Determining Gypsy Moth Female Flight Capabilities: Implications for the Establishment and Spread in Novel Habitats
Author
Srivastava, V.; Keena, M.A.; Maennicke, G.E.; Hamelin, R.C.; Griess, V.C.
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Year
2021
Title
An Efficient Strategy for Obtaining Mutants by Targeted Gene Deletion in Ophiostoma novo-ulmi
Author
Sarmiento-Villamil, J. L., Campos De Oliveira, T., Naruzawa, E. S. and Bernier, L.
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Year
2021
Title
Dormancy in laboratory-reared Asian longhorned beetles, Anoplophora glabripennis
Author
Torson, A. S., Zhang, M. L., Smith, A. J., Mohammad, L., Ong, K., Doucet, D., Roe, A.D., and Sinclair, B.J.
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2020
Year
2020
Title
Supervised learning on phylogenetically distributed data
Author
Layne,, E., Dort, E. N., Hamelin, R., Li, Y. and Blanchette, M.
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Year
2020
Title
Help, there's -omics in my comparative physiology!
Author
Torson, A. S., Dong, Y. W. and Sinclair, B.J.
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Year
2020
Title
Oh the places they’ll go: improving species distribution modelling for invasive forest pests in an uncertain world
Author
Srivastava, V., Roe, A.D., Keena, M.A., Hamelin, R.C. and Griess, V. C.
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Year
2020
Title
Assessing Niche Shifts and Conservatism by Comparing the Native and Post-Invasion Niches of Major Forest Invasive Species
Author
Srivastava, V.; Liang, W.; Keena, M.A.; Roe, A.D.; Hamelin, R.C.; Griess, V.C.
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Year
2020
Title
CRISPR/Cas9 Gene Editing: An Unexplored Frontier for Forest Pathology
Author
Dort, E.N., Tanguay, P. and Hamelin, R.C.
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Year
2020
Title
Dissection of Anoplophora glabripennis (Coleoptera: Cerambycidae) larval tissues for physiological and molecular studies
Author
Torson, A., Des Marteaux, L., Bowman, S., Zhang, M., Ong, K., Doucet, D., Sinclair, B. and Roe, A.
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Year
2020
Title
In Situ Processing and Efficient Environmental Detection (iSPEED) of tree pests and pathogens using point-of-use real-time PCR
Author
Capron, A., Stewart, D., Hrywkiw, K., Allen, K., Feau, N., Bilodeau, G., Tanguay, P., Cusson, M. and Hamelin, R. C.
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Year
2020
Title
Splot - visual analytics for spatial statistics
Author
Lumnitz S, Arribas-Bell D, Cortes RX, Gaboardi JD, Griess VC, Kang W, Oshan TM, Wolf L, Rey S.
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Year
2020
Title
An Applied Empirical Framework for Invasion Science: Confronting Biological Invasion Through Collaborative Research Aimed at Tool Production
Author
Blackburn, G.S., Bilodeau, P., Cooke, T., Cui, M., Cusson, M., Hamelin, R. C., Keena M.A., Picq, S., Roe, A.D., Shi, J., Wu, Y. and Porth, I.
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Year
2020
Title
Hybridization and introgression drive genome evolution of Dutch elm disease pathogens.
Author
Hessenauer, P., Fijarczyk, A., Martin. H., Prunier, J., Charron, G., Chapuis, J., Bernier, L., Tanguay, P., Hamelin, R. C. and Landry, C.R.
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Year
2020
Title
Assessing the Potential Distribution of Asian Gypsy Moth in Canada: A Comparison of Two Methodological Approaches
Author
Srivastava, V., Griess, V.C. & Keena, M.A.
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2019
Year
2019
Title
Reassessment of the status of Lymantria albescens and L. postalba (Lepidoptera: Erebidae: Lymantriinae) as distinct “Asian gypsy moth” species, using both mitochondrial and nuclear sequence data.
Author
Djoumad, A., Nisole, A., Stewart, D., Holden, D., Zahiri, R. Inoue, M. N., Martemyanov, V. V., Levesque, R. .C, Hamelin, R. C. and Cusson, M.
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Year
2019
Title
Expansion of LINEs and species-specific DNA repeats drives genome expansion in Asian Gypsy Moths
Author
Hebert, F. O., Blackburn, G., Béliveau, C. , Dewar, K. , Boyle, B., Gundersen-Rindal, D. E., Sparks, M. E., Cusson, M., Hamelin, R. C. & Levesque, R. C.
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Year
2019
Title
Genomic biosurveillance of forest invasive alien enemies: A story written in code
Author
Hamelin, R.C. and Roe, A. D.
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Year
2019
Title
Ecology and Evolution of the Sudden Oak Death Pathogen Phytophthora ramorum
Author
Grünwald, N.J., LeBoldus, J.M. and Hamelin, R.C.
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Year
2019
Title
Mycorrhiza: genotype assignment using phylogenetic networks
Author
Georges-Filteau, J., Hamelin, R. C. and Blanchette, M.
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Year
2019
Title
Species distribution models (SDM): applications, benefits and challenges in invasive species management.
Author
Srivastava, V., Lafond, V. & Griess, V.
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Year
2019
Title
Mitotic recombination and rapid genome evolution in the invasive forest pathogen Phytophthora ramorum.
Author
Dale AL, Feau N, Everhart SE, Dhillon B, Wong B, Sheppard J, Bilodeau GJ, Brar A, Tabima JF, Shen D, Brasier CM, Tyler BM, Grünwald NJ, Hamelin RC.
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Year
2019
Title
Improved detection and identification of the sudden oak death pathogen Phytophthora ramorum and the Port Orford cedar root pathogen Phytophthora lateralis.
Author
Feau, N., Ojeda, D.I., Beauseigle, S., Bilodeau, G.J., Brar, A., Cervantes-Arango, S., Dale, A.L., Dhillon, B., Hammett, C., Herath, P., Shamoun, S.F., Tsui, C. K.M., Tanguay, P. and Hamelin, R.C.
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Year
2019
Title
A needle in a haystack: a multigene TaqMan assay for the detection of Asian gypsy moths in bulk pheromone trap samples
Author
Stewart D, Nisole A, Djoumad A, Zahiri R, Lamarche J, Levesque RC, Hamelin RC, Cusson M
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Year
2019
Title
High-Throughput Sequencing to Investigate Phytopathogenic Fungal Propagules Caught in Baited Insect Traps
Author
Tremblay, E. D., Kimoto, T., Bérubé, J. A. and Bilodeau, G.J.
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2018
Year
2018
Title
Screening for exotic forest pathogens to increase survey capacity using metagenomics
Author
Tremblay, E.D., Duceppe, M-O, Berube, J. A.., Kimoto, T., Lemieux, C. and Bilodeau, G.J.
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Year
2018
Title
Biosurveillance of forest insects: part I—integration and application of genomic tools to the surveillance of non‑native forest insects
Author
Roe, A. D., Torson, A. S., Bilodeau, G., Bilodeau, P., Blackburn, G. S., Cui, M., Cusson, M., Doucet, D., Griess, V. C., Lafond, V., Paradis, G., Porth, I., Prunier, J., Srivastava, V., Tremblay, E., Uzunovic, A., Yemshanov, D. and Hamelin, R. C.
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Year
2018
Title
Biosurveillance of Forest Insects. Part II: Adoption of genomic tools by end user communities and barriers to integration
Author
Bilodeau P, Roe AD, Bilodeau G, Blackburn GS, Cui M, Cusson M, Doucet D, Griess VC, Lafond VMA, Nilausen C, Paradis G, Porth I, Prunier J, Srivastava V, Stewart D, Torson AS, Tremblay E, Uzunovic A, Yemshanov D, Hamelin RC.
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Year
2018
Title
Assessing the potential of genotyping- by- sequencing- derived single nucleotide polymorphisms to identify the geographic origins of intercepted gypsy moth (Lymantria dispar) specimens: A proof- of- concept study
Author
Picq, S, Keena, M, Havill, N, Stewart, D, Pouliot, E, Boyle, B, Levesque, RC, Hamelin, R, Cusson, M.
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What's new
in the bioSAFE project